SYSCONFDIR was set to the wrong path if prefix is not '/usr' and
sysconfdir is an absolute path. Use join_paths() to fix it.
Also remove the special case for prefix '/usr'. In that case Meson
already sets sysconfdir to the absolute path '/etc', so just using
join_paths() will return the correct value.
join_paths('/usr/local', 'etc') => '/usr/local/etc'
join_paths('/usr/local', '/etc') => '/etc'
join_paths('/usr', '/etc') => '/etc'